diff options
Diffstat (limited to 'tools/genmap-calcmap.nix')
-rw-r--r-- | tools/genmap-calcmap.nix | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/tools/genmap-calcmap.nix b/tools/genmap-calcmap.nix new file mode 100644 index 0000000..df9ccc3 --- /dev/null +++ b/tools/genmap-calcmap.nix @@ -0,0 +1,22 @@ +{ bionix +, k ? 30 +, e ? 2 +}: + +with bionix; + +ref: stage { + name = "genmap-mappability"; + buildInputs = with pkgs; [ genmap ]; + buildCommand = '' + mkdir $out + genmap map \ + -K ${toString k} \ + -E ${toString e} \ + --wig \ + -I ${bionix.genmap.index {} ref} \ + -O $out \ + -T $NIX_BUILD_CORES + ''; + passthru.multicore = true; +} |