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Diffstat (limited to 'tools/gridss-computeSamTags.nix')
-rw-r--r-- | tools/gridss-computeSamTags.nix | 2 |
1 files changed, 2 insertions, 0 deletions
diff --git a/tools/gridss-computeSamTags.nix b/tools/gridss-computeSamTags.nix index f75cea0..5b19a3a 100644 --- a/tools/gridss-computeSamTags.nix +++ b/tools/gridss-computeSamTags.nix @@ -4,6 +4,7 @@ , bwaIndexAttrs ? {} , faidxAttrs ? {} , flags ? null +, config ? null }: with nixpkgs; @@ -34,6 +35,7 @@ stdenv.mkDerivation rec { REFERENCE_SEQUENCE=ref.fa \ WORKING_DIR=$TMP_DIR \ TMP_DIR=$TMP_DIR \ + ${optionalString config ("CONFIGURATION_FILE=" + gridssConfig config)} \ I=${input} \ O=$out \ AS=true |