diff options
Diffstat (limited to 'tools/gridss-computeSamTags.nix')
-rw-r--r-- | tools/gridss-computeSamTags.nix | 12 |
1 files changed, 9 insertions, 3 deletions
diff --git a/tools/gridss-computeSamTags.nix b/tools/gridss-computeSamTags.nix index de44478..e07f6a5 100644 --- a/tools/gridss-computeSamTags.nix +++ b/tools/gridss-computeSamTags.nix @@ -1,5 +1,10 @@ -{ bionix, bwaIndexAttrs ? { }, faidxAttrs ? { }, flags ? null, config ? null -, heapSize ? "1G" }: +{ bionix +, bwaIndexAttrs ? { } +, faidxAttrs ? { } +, flags ? null +, config ? null +, heapSize ? "1G" +}: with bionix; with lib; @@ -11,7 +16,8 @@ let ref = matchFiletype "gridss-computeSamTags" { bam = x: x.ref; } input; sorted = matchFileSorting "gridss-computeSamTags" { name = _: true; } input; -in assert (sorted); +in +assert sorted; stage rec { name = "gridss-computeSamTags"; |