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Diffstat (limited to 'tools/gridss-extractSVReads.nix')
| -rw-r--r-- | tools/gridss-extractSVReads.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/tools/gridss-extractSVReads.nix b/tools/gridss-extractSVReads.nix index f2fab30..cf9085d 100644 --- a/tools/gridss-extractSVReads.nix +++ b/tools/gridss-extractSVReads.nix @@ -32,6 +32,7 @@ stage rec { done java -Dsamjdk.create_index=true \ -cp ${bionix.gridss.jar} gridss.ExtractSVReads \ + VERBOSITY=WARNING \ REFERENCE_SEQUENCE=ref.fa \ I=input.bam \ O=$out \ |