diff options
Diffstat (limited to 'tools/gridss-softClipsToSplitReads.nix')
| -rw-r--r-- | tools/gridss-softClipsToSplitReads.nix | 4 |
1 files changed, 1 insertions, 3 deletions
diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix index 47a3abd..2fff15c 100644 --- a/tools/gridss-softClipsToSplitReads.nix +++ b/tools/gridss-softClipsToSplitReads.nix @@ -17,8 +17,6 @@ let ref = matchFiletype "gridss-softClipsToSplitReads" { bam = x: x.ref; } input; in -assert (matchFileSorting "gridss-softClipsToSplitReads" { name = _: true; } input); - stdenv.mkDerivation rec { name = "gridss-softClipsToSplitReads"; buildInputs = [ jre bwa ]; @@ -37,5 +35,5 @@ stdenv.mkDerivation rec { ${optionalString (config != null) ("CONFIGURATION_FILE=" + bionix.gridss.gridssConfig config)} \ WORKER_THREADS=$NIX_BUILD_CORES ''; - passthru.filetype = filetype.bam { ref = ref; sorting = sort.none {}; }; + passthru.filetype = filetype.bam { ref = ref; sorting = matchFileSorting "grids-softClipsToSplitReads" { coord = _: input.sorting; name = _: sort.none {}; none = _: input.sorting;} input;}; } |