diff options
Diffstat (limited to 'tools/gridss.nix')
| -rw-r--r-- | tools/gridss.nix | 3 |
1 files changed, 3 insertions, 0 deletions
diff --git a/tools/gridss.nix b/tools/gridss.nix index aaf8e16..41f6a5a 100644 --- a/tools/gridss.nix +++ b/tools/gridss.nix @@ -43,6 +43,9 @@ rec { Type: assemble :: {config :: ini = null, heapSize :: String = "31g", ...} -> [bam] -> bam */ assemble = callBionixE ./gridss-assemble.nix; + shardedAssemble = n: a: input: + let assemblies = genList (i: bionix.gridss.assemble (a // { jobNodes = n; jobIndex = i;}) input) n; + in if n <= 1 then bionix.gridss.assemble a input else bionix.gridss.assemble (a // {workdirs = map (a: a.work) assemblies;}) input; /* Invoke identifyVariants tool Type: identifyVariants :: {config :: ini = null, heapSize :: String = "4g", ...} -> [bam] -> VCF |