diff options
Diffstat (limited to 'tools/hisat2-align.nix')
| -rw-r--r-- | tools/hisat2-align.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/hisat2-align.nix b/tools/hisat2-align.nix index dfd9601..7a216a6 100644 --- a/tools/hisat2-align.nix +++ b/tools/hisat2-align.nix @@ -33,6 +33,6 @@ in stage { | samtools sort -n \ > $out ''; - passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.name {};} else filetype.sam {ref = ref; sorting = sort.name {};}; + passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.none {};} else filetype.sam {ref = ref; sorting = sort.name {};}; passthru.multicore = true; } |