diff options
Diffstat (limited to 'tools/kallisto-index.nix')
-rw-r--r-- | tools/kallisto-index.nix | 22 |
1 files changed, 22 insertions, 0 deletions
diff --git a/tools/kallisto-index.nix b/tools/kallisto-index.nix new file mode 100644 index 0000000..33dfb80 --- /dev/null +++ b/tools/kallisto-index.nix @@ -0,0 +1,22 @@ +{bionix +, nixpkgs +, kmerSize ? 31 +, unique ? false}: + +with nixpkgs; +with lib; +with bionix.types; + +assert (kmerSize > 1); + +input: + +assert (matchFiletype input { fa = _: true; } input); + +stdenv.mkDerivation { + name = "kallisto-index"; + buildInputs = [ kallisto ]; + buildCommand = '' + kallisto index -k ${toString kmerSize} ${optionalString unique "--make-unique"} -i $out ${input} + ''; +} |