diff options
Diffstat (limited to 'tools/octopus-call.nix')
-rw-r--r-- | tools/octopus-call.nix | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/tools/octopus-call.nix b/tools/octopus-call.nix index 252e210..8a78f01 100644 --- a/tools/octopus-call.nix +++ b/tools/octopus-call.nix @@ -63,7 +63,11 @@ stage { ${optionalString (max-genotypes != null) "--max-genotypes ${toString max-genotypes}"} \ ${optionalString (targets != null) (handleTarget targets)} \ ${flags} + + # Strip out octopus ARGV + sed -i '/^##octopus=/d' $out ''; passthru.filetype = filetype.vcf { inherit ref; }; passthru.multicore = true; + stripStorePaths = false; } |