diff options
Diffstat (limited to 'tools/platypus-callVariants.nix')
| -rw-r--r-- | tools/platypus-callVariants.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/platypus-callVariants.nix b/tools/platypus-callVariants.nix index c0204dc..7b68b28 100644 --- a/tools/platypus-callVariants.nix +++ b/tools/platypus-callVariants.nix @@ -16,7 +16,7 @@ in stdenv.mkDerivation { name = "platypus"; buildInputs = [ platypus ]; buildCommand = '' - ln -s ${ref} ref.fa + ln -s ${ref.seq} ref.fa ln -s ${bionix.samtools.faix indexAttrs ref} ref.fa.fai ${concatMapStringsSep "\n" (p: "ln -s ${p} ${filename p}.bam") inputs} ${concatMapStringsSep "\n" (p: "ln -s ${bionix.samtools.index bamIndexAttrs p} ${filename p}.bai") inputs} |