1 files changed, 19 insertions, 0 deletions
diff --git a/tools/samtools-sort.nix b/tools/samtools-sort.nix
new file mode 100644
index 0000000..1a79c9f
--- /dev/null
+++ b/tools/samtools-sort.nix
@@ -0,0 +1,19 @@
+{ stdenv
+, callPackage
+, lib
+, samtools
+, nameSort ? false
+, flags ? null
+}:
+
+input:
+
+with lib;
+
+stdenv.mkDerivation {
+  name = "samtools-sort";
+  buildInputs = [ samtools ];
+  buildCommand = ''
+    samtools sort -@ $NIX_BUILD_CORES ${optionalString nameSort "-n"} ${optionalString (flags != null) flags} ${input} > $out
+  '';
+}