diff options
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/mutect-app.nix | 2 | ||||
| -rw-r--r-- | tools/mutect-call.nix | 1 |
2 files changed, 2 insertions, 1 deletions
diff --git a/tools/mutect-app.nix b/tools/mutect-app.nix index 02c4f51..ca78d34 100644 --- a/tools/mutect-app.nix +++ b/tools/mutect-app.nix @@ -19,7 +19,7 @@ in stdenv.mkDerivation rec { sha256 = "1pq7iv720bp970qsyyshwk98xdb7naw566y6gk9cpj6bmm08z9v3"; }; - buildInputs = [ makeWrapper jre unzip ]; + buildInputs = [ makeWrapper unzip ]; unpackPhase = '' unzip $src -d $TMPDIR diff --git a/tools/mutect-call.nix b/tools/mutect-call.nix index e2fe3a1..e98ba4b 100644 --- a/tools/mutect-call.nix +++ b/tools/mutect-call.nix @@ -38,4 +38,5 @@ stage { --input_file:tumour tumour.bam \ --out $out ''; + passthru.filetype = types.filetype.vcf { inherit ref; }; } |