diff options
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/bwa-mem.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/bwa-mem.nix b/tools/bwa-mem.nix index eed488e..3420294 100644 --- a/tools/bwa-mem.nix +++ b/tools/bwa-mem.nix @@ -36,5 +36,5 @@ in stdenv.mkDerivation { ${optionalString bamOutput "| samtools view -b"} \ > $out ''; - passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.none {};} else filetype.sam {ref = ref; sorting = sort.none {};}; + passthru.filetype = if bamOutput then filetype.bam {ref = ref; sorting = sort.name {};} else filetype.sam {ref = ref; sorting = sort.name {};}; } |