diff options
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/samtools-index.nix | 2 | ||||
| -rw-r--r-- | tools/samtools-merge.nix | 8 |
2 files changed, 4 insertions, 6 deletions
diff --git a/tools/samtools-index.nix b/tools/samtools-index.nix index aad46a7..6919f97 100644 --- a/tools/samtools-index.nix +++ b/tools/samtools-index.nix @@ -10,7 +10,7 @@ with lib; with bionix.types; assert (matchFiletype "samtools-index" { bam = _: true; } input); -assert (matchSorting "samtools-index" { coord = _: true; } input); +assert (matchFileSorting "samtools-index" { coord = _: true; } input); stdenv.mkDerivation { name = "samtools-index"; diff --git a/tools/samtools-merge.nix b/tools/samtools-merge.nix index 6d072b0..eacf520 100644 --- a/tools/samtools-merge.nix +++ b/tools/samtools-merge.nix @@ -10,13 +10,11 @@ with nixpkgs; with lib; let - inherit (bionix.types) matchFiletype option-sort; - inputIsSorted = input: matchFiletype "samtools-merge" { - bam = _: true; #{sorting, ...}: sorting == option-sort.some (bionix.types.sorting.coord {}); - } input; + inherit (bionix.types) matchFiletype matchSorting; + inputIsHomogenous = length (unique (map (matchFiletype "samtools-merge" {bam = x: x // {sorting = matchSorting "samtools-merge" {coord = _: "coord";} x;};}) inputs)) == 1; in -assert (all inputIsSorted inputs); +assert inputIsHomogenous; stdenv.mkDerivation { name = "samtools-merge"; |