diff options
Diffstat (limited to 'tools')
| -rw-r--r-- | tools/ascat.nix | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/tools/ascat.nix b/tools/ascat.nix index 05e2299..9e80e4a 100644 --- a/tools/ascat.nix +++ b/tools/ascat.nix @@ -4,6 +4,14 @@ with bionix; { app = pkgs.callPackage ./ascat-app.nix {}; + + /* Generate GC correction file for ascatNGS. + Type: {ref :: fasta, chrPrefix :: string, ...} -> (snps :: VCF) -> (gc :: GC) + */ gccorrect = callBionixE ./ascat-gccorrect.nix; + + /* Call CNVs using ascatNGS. Gender is a string as per ascatNGS docs (e.g., "XX"). + Type: {ref :: fasta, gc :: GC, ...} -> {tumour :: bam, normal :: bam, gender :: string} -> CNVs + */ callCNV = callBionixE ./ascat-callCNV.nix; } |