| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-12-14 | gridss: 2.10.1 -> 2.10.2 | Justin Bedo | |
| 2020-11-02 | gridss: 2.10.0 -> 2.10.1 | Justin Bedo | |
| 2020-10-15 | gridss: 2.9.4 -> 2.10.0 | Justin Bedo | |
| 2020-09-02 | gridss: shard assembly into 10 pieces by default | Justin Bedo | |
| 2020-07-16 | gridss: 2.9.1 -> 2.9.4 | Justin Bedo | |
| 2020-05-24 | gridss: 2.8.3 -> 2.9.1 | Justin Bedo | |
| 2020-04-10 | gridss 2.7.3 -> 2.8.3 | Justin Bedo | |
| 2019-11-27 | gridss: 2.7.2 → 2.7.3 | Justin Bedo | |
| 2019-11-20 | gridss: 2.7.1 → 2.7.2 | Justin Bedo | |
| 2019-11-04 | gridss: 2.7.0 → 2.7.1 | Justin Bedo | |
| 2019-11-01 | gridss: 2.6.2 -> 2.7.0 | Justin Bedo | |
| 2019-09-25 | gridss 2.6.0 → 2.6.2 | Justin Bedo | |
| 2019-09-10 | gridss: 2.5.2 -> 2.6.0 | Justin Bedo | |
| 2019-08-29 | gridss: 2.5.1 -> 2.5.2 | Justin Bedo | |
| 2019-08-15 | gridss: 2.5.0 -> 2.5.1 | Justin Bedo | |
| 2019-07-28 | gridss: 2.4.0 -> 2.5.0 | Justin Bedo | |
| 2019-06-21 | gridss: 2.2.2 -> 2.4.0 | Justin Bedo | |
| 2019-04-08 | grids: add function to include assemblies with annotated VCF | Justin Bedo | |
| 2019-03-28 | gridss: 2.0.0 → 2.2.2 | Justin Bedo | |
| 2019-03-06 | api docs: init GRIDSS | Justin Bedo | |
| 2019-01-09 | large refactor | Justin Bedo | |
| - use bionix.pkgs instead of nixpkgs - replace stdenv.mkDerivation with stage | |||
| 2018-12-19 | gridss: simplify preprocessing and rewrite using new pipe function | Justin Bedo | |
| 2018-12-18 | qsub: refactor overriding | Justin Bedo | |
| 2018-12-12 | gridss: refactor identify & annotate variants | Justin Bedo | |
| 2018-11-22 | gridss: restructure gridss pipeline | Justin Bedo | |
| 2018-11-13 | Merge branch 'master' of https://github.com/PapenfussLab/bionix | l-d-s | |
| 2018-11-12 | Attempt to integrate config file into GRIDSS stage | l-d-s | |
| 2018-11-07 | Fix to gridss. | l-d-s | |
| 2018-10-29 | Split gridss into constituents | Justin Bedo | |
| Wrap each individual command for GRIDSS so that bionix executed the pipeline rather than GRIDSS. This patch introduces a "call" function that executed the whole pipeline in bionix on an arbitrary BAM file. Resolves #10. | |||
| 2018-10-05 | implement types | Justin Bedo | |
| 2018-10-04 | Refactor to use bionix tree directly | Justin Bedo | |
| 2018-09-26 | Missing GRIDSS files | Justin Bedo | |
 |
index : bionix.git | |
| Functional, highly-reproducible bioinformatics pipelines |
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