diff options
| author | l-d-s <l@sdf.org> | 2018-11-12 16:54:30 +1100 |
|---|---|---|
| committer | l-d-s <l@sdf.org> | 2018-11-12 16:54:30 +1100 |
| commit | 4574deb8e1649eaf63df424585d11645c7cfa7dd (patch) | |
| tree | 165478a6535a1b0172f489c03eb2a6d8ac18c023 /tools/gridss.nix | |
| parent | b46138826260f1ed963ffe18fef7ec4ce70b6de8 (diff) | |
Attempt to integrate config file into GRIDSS stage
Diffstat (limited to 'tools/gridss.nix')
| -rw-r--r-- | tools/gridss.nix | 1 |
1 files changed, 1 insertions, 0 deletions
diff --git a/tools/gridss.nix b/tools/gridss.nix index d46a8ce..bc2f0b8 100644 --- a/tools/gridss.nix +++ b/tools/gridss.nix @@ -8,6 +8,7 @@ rec { url = "https://github.com/PapenfussLab/gridss/releases/download/v2.0.0/gridss-2.0.0-gridss-jar-with-dependencies.jar"; sha256 = "01srl3qvv060whqg1y1fpxjc5cwga5wscs1bmf1v3z87dignra7k"; }; + gridssConfig = callBionix ./gridss-configFile.nix {}; callVariants = callBionix ./gridss-callVariants.nix; computeSamTags = callBionix ./gridss-computeSamTags.nix; softClipsToSplitReads = callBionix ./gridss-softClipsToSplitReads.nix; |