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{nixpkgs ? import <nixpkgs> {}}:
let
bionix = nixpkgs.lib.makeExtensible (self:
let callBionix = file: import file { bionix = self; nixpkgs = nixpkgs; };
in with self; {
bwa = callBionix ./tools/bwa.nix;
crumble = callBionix ./tools/crumble.nix;
fastqc = callBionix ./tools/fastqc.nix;
gridss = callBionix ./tools/gridss.nix;
mosdepth = callBionix ./tools/mosdepth.nix;
platypus = callBionix ./tools/platypus.nix;
ref = callBionix ./references.nix;
samtools = callBionix ./tools/samtools.nix;
strelka = callBionix ./tools/strelka.nix;
qsub = nixpkgs.callPackage ./lib/qsub.nix {};
});
in bionix
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