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This example is a tumour-normal processing workflow applied to a
publically available whole-genome sequencing (WGS) dataset. As this
example uses WGS data, a large amount of data will be downloaded.
Furthermore, a large amount of space will be required to build the final
products.
# Building on local machine
Run `nix build -I bionix=../..` in this directory.
# Building via HPC (slurm or torque)
Run `nix build -f cluster.nix` to build on slurm. Note that Nix must be
configured such that the temporary build directories are created on
shared storage.
For Torque, run `nix build -f cluster.nix -I bionix=../.. --argstr
tmpDir /scratch/`. Unlike the slurm handler, a shared tmpdir location
must be specified.
In both cases, you may need to adjust the resource limits specified in
cluster.nix to suit your particular cluster hardware.
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