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|
{ tmpDir ? null }:
let
bionix = import <bionix> {
overlays = [
(_: super: with super;
{
exec = f: def (slurm-exec f) {
ppn = 24;
mem = 7;
walltime = "3:00:00";
};
})
(self: super:
with super; {
minimap2.align = def minimap2.align {
mem = 15;
walltime = "16:00:00";
};
samtools = with samtools; {
markdup = def markdup { walltime = "12:00:00"; };
fixmate = def fixmate { walltime = "10:00:00"; };
sort = def sort {
mem = 27;
flags = "-m 1G";
};
};
})
];
};
in
import ./. { inherit bionix; }
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