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#!/bin/sh
set -e
if [[ $# -ne 5 ]] ; then
echo "Usage: $0 ref normal1 normal2 tumour1 tumour2"
exit 1
fi
function cleanup {
if [[ -e tnpair-$$ ]]; then
rm tnpair-$$
fi
}
trap cleanup INT TERM EXIT
ref=`readlink -f $1`
norm1=`readlink -f $2`
norm2=`readlink -f $3`
tumour1=`readlink -f $4`
tumour2=`readlink -f $5`
refhash=`nix-hash --base32 --type sha256 --flat $ref`
norm1hash=`nix-hash --base32 --type sha256 --flat $norm1`
norm2hash=`nix-hash --base32 --type sha256 --flat $norm2`
tumour1hash=`nix-hash --base32 --type sha256 --flat $tumour1`
tumour2hash=`nix-hash --base32 --type sha256 --flat $tumour2`
cat > tnpair-$$ <<EOF
import ./tnpair.nix {
normal = {
input1={
url="file://$norm1";
sha256="$norm1hash";
};
input2={
url="file://$norm2";
sha256="$norm2hash";
};
};
tumour = {
input1={
url = "file://$tumour1";
sha256 = "$tumour1hash";
};
input2={
url = "file://$tumour2";
sha256 = "$tumour2hash";
};
};
ref = {
url = "file://$ref";
sha256 = "$refhash";
};
}
EOF
nix build --keep-going "(import ./tnpair-$$)"
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