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|
{
stdenv,
fetchurl,
fetchFromGitHub,
python3,
}: let
python = python3.withPackages (pkgs:
with pkgs; [
numpy
scipy
pysam
matplotlib
future
(mosek pkgs)
]);
mosek = assert stdenv.system == "x86_64-linux";
pkgs:
pkgs.buildPythonPackage {
pname = "mosek";
version = "8.1.0.83";
src = fetchurl {
url = "https://download.mosek.com/stable/8.1.0.83/mosektoolslinux64x86.tar.bz2";
sha256 = "sha256-d/S/IalmQwizWYZ89ZskUoVAaXWYszuw7w+w0Vp+13k";
};
doCheck = false;
preBuild = ''
cd 8/tools/platform/linux64x86/python/3/
'';
propagatedBuildInputs = with pkgs; [numpy];
postInstall = ''
find $out -name lib\*.so\* -print0 | xargs -0 \
patchelf --add-rpath ${stdenv.cc.cc.lib}/lib
'';
};
in
stdenv.mkDerivation rec {
pname = "AmpliconArchitect";
version = "1.3";
src = fetchFromGitHub {
owner = "virajbdeshpande";
repo = pname;
rev = "40da8520a953810ad43e5a6fdf4aba7449d7f5e0";
sha256 = "sha256-4SAOpdjXiZFTfpD6WpLfs2zDyGT2hcWabl+sUjboBpc=";
};
doBuild = false;
installPhase = ''
mkdir -p $out/libexec
cp -r src $out/libexec/aa
mkdir $out/bin
ln -s $out/libexec/aa/{AmpliconArchitect,amplified_intervals,ref_util,downsample}.py $out/bin
'';
buildInputs = [python];
}
|
