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{ bionix }:
with bionix;
{
app = pkgs.callPackage ./ascat-app.nix { };
/* Generate GC correction file for ascatNGS.
Type: gccorrect :: {ref :: fasta, chrPrefix :: string, ...} -> (snps :: VCF) -> (gc :: GC)
*/
gccorrect = callBionixE ./ascat-gccorrect.nix;
/* Call CNVs using ascatNGS. Gender is a string as per ascatNGS docs (e.g., "XX").
Type: callCNV :: {ref :: fasta, gc :: GC, ...} -> {tumour :: bam, normal :: bam, gender :: string} -> CNVs
*/
callCNV = callBionixE ./ascat-callCNV.nix;
}
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