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{ bionix }:
with bionix;
{
/* Align a sequence against a reference
Type: align :: {ref :: fasta, bamOutput :: bool, ...} -> {input1 :: fastq, input2 :: fastq} -> bam/sam
*/
align = callBionixE ./bowtie-align.nix;
/* Create a Bowtie index
Type: index :: {seed :: int, ...} -> fasta -> index
*/
index = callBionixE ./bowtie-index.nix;
}
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