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{ bionix }:
with bionix;
rec {
/* Align read against a reference: defaults to bwa-mem */
align = bwa-mem;
/* Align reads against a reference using bwa-mem
Type: bwa-mem :: {ref :: fasta, bamOutput :: bool, ...} -> {input1, input2} -> bam/sam
*/
bwa-mem = callBionixE ./bwa-mem.nix;
/* Creates an reference index for BWA
Type: index :: {...} -> fasta -> BWA index
*/
index = callBionixE ./bwa-index.nix;
}
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