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{bionix}:
with bionix;
{
app = lib.callPackageWith (pkgs // pkgs.pythonPackages) ./cnvkit-app.nix {};
/* Call CNVs
Type: callCNV :: {targets :: target file, annotations :: annotation file, ...} -> {normals :: [bam], tumours :: [bam]} -> CNVs
*/
callCNV = callBionixE ./cnvkit-batch.nix;
/* Scatter plot from CNV calls
Type: scatterPlot :: {} -> CNVs -> PDF
*/
scatterPlot = callBionixE ./cnvkit-scatter.nix;
}
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