tools/cnvkit.nix


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{bionix}:

with bionix;

{
  app = lib.callPackageWith (pkgs // pkgs.pythonPackages) ./cnvkit-app.nix {};

  /* Call CNVs
  Type: callCNV :: {targets :: target file, annotations :: annotation file, ...} -> {normals :: [bam], tumours :: [bam]} -> CNVs
  */
  callCNV = callBionixE ./cnvkit-batch.nix;
}