tools/hisat2-extractSpliceSites.nix


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17

{ bionix
, flags ? null
}:

gtf:

with bionix;
with lib;
with types;

stage {
  name = "hisat2-extractSpliceSites";
  buildInputs = with pkgs; [ hisat2 ];
  buildCommand = ''
    hisat2_extract_splice_sites.py ${gtf} > $out
  '';
}