1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
{ bionix , flags ? null }: gtf: with bionix; with lib; with types; stage { name = "hisat2-extractSpliceSites"; buildInputs = with pkgs; [ hisat2 ]; buildCommand = '' hisat2_extract_splice_sites.py ${gtf} > $out ''; }