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{ bionix }:
with bionix;
rec {
/* Align read against a reference
Type: hisat2-mem :: {ref :: fasta, bamOutput :: bool, ...} -> {input1, input2} -> bam/sam
*/
align = callBionixE ./hisat2-align.nix;
/* Creates an reference index for HISAT2
Type: index :: {...} -> fasta -> HISAT2 index
*/
index = callBionixE ./hisat2-index.nix;
extractSpliceSites = callBionixE ./hisat2-extractSpliceSites.nix;
extractExons = callBionixE ./hisat2-extractExons.nix;
}
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