tools/infercnv-infer.nix


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{ bionix
, flags ? null
}:

with bionix;
with lib;

{ ref
, expr
, pos
}:

stage {
  name = "inferCNV";
  buildInputs = [ bionix.infercnv.app ];
  buildCommand = ''
    inferCNV.R --output_dir $TMPDIR \
      ${optionalString (flags != null) flags} \
      --ref ${ref} \
      ${expr} \
      ${pos}
    mkdir $out
    cp -r $TMPDIR/* $out
  '';
}