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{bionix
, kmerSize ? 31
, unique ? false}:
with bionix;
with lib;
with types;
assert (kmerSize > 1);
input:
assert (matchFiletype input { fa = _: true; } input);
stage {
name = "kallisto-index";
buildInputs = with pkgs; [ kallisto ];
buildCommand = ''
kallisto index -k ${toString kmerSize} ${optionalString unique "--make-unique"} -i $out ${input}
'';
}
|
