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{ stdenv
, lib
, callPackage
, mosdepth
, index ? callPackage ./samtools-index.nix {}
, flags ? null}:
with lib;
input:
stdenv.mkDerivation {
name = "mosdepth-depth";
buildInputs = [ mosdepth ];
buildCommand = ''
mkdir $out
ln -s ${input} input.bam
ln -s ${index input} input.bam.bai
mosdepth -t $NIX_BUILD_CORES ${optionalString (flags != null) flags} $out/out input.bam
'';
}
|