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{ bionix }:
with bionix;
{
/* Call variants for a population
Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> [bam] -> vcf
*/
call = callBionixE ./octopus-call.nix;
/* Call somatic variants
Type: { fast :: bool, very-fast :: bool, max-genotypes :: int, targets :: FilePath + [string], ... } -> { normal :: bam, tumours :: [bam] } -> vcf
*/
callSomatic = callBionixE ./octopus-callSomatic.nix;
}
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