tools/samtools-sort.nix


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{ bionix
, nixpkgs
, nameSort ? false
, flags ? null
}:

input:

with nixpkgs;
with lib;

stdenv.mkDerivation {
  name = "samtools-sort";
  buildInputs = [ samtools ];
  buildCommand = ''
    samtools sort -@ $NIX_BUILD_CORES ${optionalString nameSort "-n"} ${optionalString (flags != null) flags} ${input} > $out
  '';
}