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{ stdenv
, callPackage
, lib
, samtools
, nameSort ? false
, flags ? null
}:
input:
with lib;
stdenv.mkDerivation {
name = "samtools-sort";
buildInputs = [ samtools ];
buildCommand = ''
samtools sort -@ $NIX_BUILD_CORES ${optionalString nameSort "-n"} ${optionalString (flags != null) flags} ${input} > $out
'';
}
|