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{ bionix }:
with bionix;
{
/* Split aligned reads based on primary and secondary alignments
Type: { ... } -> { primary :: bam, secondary :: bam } -> { primary_specific :: bam, primary_multi :: bam, secondary_specific :: bam, secondary_multi :: bam, unassigned :: bam, unresolved :: bam }
*/
allocate = callBionixE ./xenomapper-allocate.nix;
}
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