diff options
| author | Justin Bedo <cu@cua0.org> | 2023-01-16 11:57:58 +1100 |
|---|---|---|
| committer | Justin Bedo <cu@cua0.org> | 2023-01-17 09:23:20 +1100 |
| commit | ddf49e4cce3978368cc08e015e5d1492a5b7c93f (patch) | |
| tree | 5480746407af678e9694100b51b75a9807e56f74 | |
| parent | e65843243bb0c131b040db0fd437dc22e924316f (diff) | |
basic README and license
| -rw-r--r-- | LICENSE | 19 | ||||
| -rw-r--r-- | README | 5 | ||||
| -rw-r--r-- | package.yaml | 3 | ||||
| -rw-r--r-- | phylogenies.cabal | 4 |
4 files changed, 27 insertions, 4 deletions
@@ -0,0 +1,19 @@ +Copyright (c) 2022–2023 Justin Bedő + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. @@ -0,0 +1,5 @@ +This infers a phylogentic tree from SNV calls. The input file format is textual +with rows corresponding to (copy-neutral) SNV calls that contain an identifier +(ignored) and any number count/depth pairs separated by whitespace. Count and +depth must be natural numbers with count ≤ depth. See `--help` flag for +options. diff --git a/package.yaml b/package.yaml index 8290eed..23b8f71 100644 --- a/package.yaml +++ b/package.yaml @@ -1,6 +1,6 @@ name: phylogenies version: 0.0.1 -synopsis: phylogeny playground +synopsis: phylogeny inferencing maintainer: Justin Bedo <cu@cua0.org> license: MIT @@ -13,6 +13,5 @@ executable: - ppl - containers - log-domain - - vector - random - optparse-applicative diff --git a/phylogenies.cabal b/phylogenies.cabal index e8cea10..3702eaa 100644 --- a/phylogenies.cabal +++ b/phylogenies.cabal @@ -6,9 +6,10 @@ cabal-version: 1.12 name: phylogenies version: 0.0.1 -synopsis: phylogeny playground +synopsis: phylogeny inferencing maintainer: Justin Bedo <cu@cua0.org> license: MIT +license-file: LICENSE build-type: Simple executable phylogenies @@ -25,5 +26,4 @@ executable phylogenies , optparse-applicative , ppl , random - , vector default-language: Haskell2010 |