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author | Justin Bedo <cu@cua0.org> | 2017-03-29 09:14:33 +1100 |
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committer | Justin Bedo <cu@cua0.org> | 2017-03-29 09:14:33 +1100 |
commit | 32f0a614798f42d0ff51a325ba183aaa85030b24 (patch) | |
tree | 077f7c9c9d4f2edc6bf22ff647bbba3030d301db | |
parent | 7af01d594acaf949ef1d4bbe22142b45345b8b20 (diff) |
Correct p-values
-rw-r--r-- | R/pmt.R | 4 |
1 files changed, 3 insertions, 1 deletions
@@ -54,7 +54,9 @@ pmt <- function(a, b, two.sided=T, signed=F) { t1 <- mapply(function(xa, mu, rho) { i <- 0:xa; logsumexp(i * log(2 * mu) - lfactorial(i) - i * log(1 + rho))}, a, mu, rho) t2 <- mapply(function(xb, mu, rho) { j <- xb:(xb*100); logsumexp(j * log(2 * mu * rho) - lfactorial(j) - j * log(1 + rho))}, b, mu, rho) - ps <- (2*mu-t1-t2) / log(10) + ps <- (2*mu-t1-t2) + ps <- ps - log1p(ps) + ps <- ps / log(10) if(!two.sided) ps[msk] <- NA else if(signed) ps <- ps * (1-2*msk) ps |