aboutsummaryrefslogtreecommitdiff
path: root/man/pmt.Rd
diff options
context:
space:
mode:
Diffstat (limited to 'man/pmt.Rd')
-rw-r--r--man/pmt.Rd33
1 files changed, 33 insertions, 0 deletions
diff --git a/man/pmt.Rd b/man/pmt.Rd
new file mode 100644
index 0000000..c9e0250
--- /dev/null
+++ b/man/pmt.Rd
@@ -0,0 +1,33 @@
+\name{pmt}
+\alias{pmt}
+\title{Poisson Margin Test}
+\description{
+ Computes p-values for two sets of counts using the Poisson Margin Test.
+}
+\usage{
+pmt(a, b)
+}
+\arguments{
+ \item{a}{
+ Vector of counts
+}
+ \item{b}{
+ Vector of counts
+}
+}
+\details{
+ This function computes the Poisson Margin Test (PMT) for two sets of counts.
+}
+\value{
+ A vector of log10 p-values is returned, corresponding to the input vectors.
+}
+\references{
+Kowalczyk, A., Bedő, J., Conway, T., Beresford-Smith, B., 2011. The Poisson margin test for normalization-free significance analysis of NGS data. Journal of Computational Biology 18, 391–400. doi:10.1089/cmb.2010.0272
+}
+\author{
+ Justin Bedő
+}
+%\examples{
+%}
+\keyword{NGS}
+\keyword{Poisson}