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authorfenze <fiedorowicz.kacper@gmail.com>2022-11-23 16:58:20 +0000
committerfenze <fiedorowicz.kacper@gmail.com>2022-11-23 16:58:20 +0000
commit0787f62e1676ebc6d295d5eb82eab8532dcf204f (patch)
tree390a9da3372f04a9a481ec750de5335c6493f42f /user-scripts/debian-12/rose-GIO_MODULE_DIR.desktop
parent00b64b6ee5f5849b9dedcb17140eab7b9202fc19 (diff)
fix style formatting
Diffstat (limited to 'user-scripts/debian-12/rose-GIO_MODULE_DIR.desktop')
0 files changed, 0 insertions, 0 deletions
generated by cgit v1.2.3 (git 2.25.1) at 2026-04-26 04:32:24 +0000
ction */ .highlight .nl { color: #369; font-style: italic } /* Name.Label */ .highlight .nn { color: #B06; font-weight: bold } /* Name.Namespace */ .highlight .py { color: #369; font-weight: bold } /* Name.Property */ .highlight .nt { color: #B06; font-weight: bold } /* Name.Tag */ .highlight .nv { color: #369 } /* Name.Variable */ .highlight .ow { color: #080 } /* Operator.Word */ .highlight .w { color: #BBB } /* Text.Whitespace */ .highlight .mb { color: #00D; font-weight: bold } /* Literal.Number.Bin */ .highlight .mf { color: #00D; font-weight: bold } /* Literal.Number.Float */ .highlight .mh { color: #00D; font-weight: bold } /* Literal.Number.Hex */ .highlight .mi { color: #00D; font-weight: bold } /* Literal.Number.Integer */ .highlight .mo { color: #00D; font-weight: bold } /* Literal.Number.Oct */ .highlight .sa { color: #D20; background-color: #FFF0F0 } /* Literal.String.Affix */ .highlight .sb { color: #D20; background-color: #FFF0F0 } /* Literal.String.Backtick */ .highlight .sc { color: #D20; background-color: #FFF0F0 } /* Literal.String.Char */ .highlight .dl { color: #D20; background-color: #FFF0F0 } /* Literal.String.Delimiter */ .highlight .sd { color: #D20; background-color: #FFF0F0 } /* Literal.String.Doc */ .highlight .s2 { color: #D20; background-color: #FFF0F0 } /* Literal.String.Double */ .highlight .se { color: #04D; background-color: #FFF0F0 } /* Literal.String.Escape */ .highlight .sh { color: #D20; background-color: #FFF0F0 } /* Literal.String.Heredoc */ .highlight .si { color: #33B; background-color: #FFF0F0 } /* Literal.String.Interpol */ .highlight .sx { color: #2B2; background-color: #F0FFF0 } /* Literal.String.Other */ .highlight .sr { color: #080; background-color: #FFF0FF } /* Literal.String.Regex */ .highlight .s1 { color: #D20; background-color: #FFF0F0 } /* Literal.String.Single */ .highlight .ss { color: #A60; background-color: #FFF0F0 } /* Literal.String.Symbol */ .highlight .bp { color: #038 } /* Name.Builtin.Pseudo */ .highlight .fm { color: #06B; font-weight: bold } /* Name.Function.Magic */ .highlight .vc { color: #369 } /* Name.Variable.Class */ .highlight .vg { color: #D70 } /* Name.Variable.Global */ .highlight .vi { color: #33B } /* Name.Variable.Instance */ .highlight .vm { color: #369 } /* Name.Variable.Magic */ .highlight .il { color: #00D; font-weight: bold } /* Literal.Number.Integer.Long */
{bionix
,db
,heapSize ? "31g"
,flags ? ""}:

input:

with bionix;
with types;

assert (matchFiletype "snpeff-annotate" { vcf = _: true; } input);

stage {
  name = "snpeff-annotate";
  buildInputs = with pkgs; [ snpeff ];
  JAVA_TOOL_OPTIONS = "-Xmx${heapSize}";
  buildCommand = ''
    ln -s ${db} ${db.name}
    snpeff -nodownload -dataDir $TMPDIR ${db.name} ${input} > $out
  '';
  passthru.filetype = input.filetype;
}