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authorJustin Bedo <cu@cua0.org>2022-12-05 16:50:43 +1100
committerJustin Bedo <cu@cua0.org>2022-12-07 15:36:01 +1100
commitd35173389b0b9661046c91a1f4106c484316c53f (patch)
treee284a31d05ca5ffcc1e97454f4b3bbc275bacdff
parent5703e89a4780e9333e69cfad71fcf2447e02e023 (diff)
add results from datasets available on mavedb
-rw-r--r--106-Glu117.tikz147
-rw-r--r--106-Leu113.tikz146
-rw-r--r--106-Phe115.tikz131
-rw-r--r--106-samples-log.tikz108
-rw-r--r--106-samples.tikz97
-rw-r--r--brca1-density.tikz4760
-rw-r--r--brca1-hist-pub.jpgbin0 -> 50900 bytes
-rw-r--r--gku689fig3-a.pdfbin0 -> 11820 bytes
-rw-r--r--gku689fig3-b.jpgbin0 -> 17660 bytes
-rw-r--r--gku689fig3-b.pdfbin0 -> 12972 bytes
-rw-r--r--gku689fig3-b.svg516
-rw-r--r--gku689fig3-c.pdfbin0 -> 12801 bytes
-rw-r--r--gku689fig3-key.pdfbin0 -> 8777 bytes
-rw-r--r--helix-erbb2-pub.jpgbin0 -> 203279 bytes
-rw-r--r--helix-erbb2.tikz1537
-rw-r--r--slides.bib37
-rw-r--r--slides.tex124
17 files changed, 7591 insertions, 12 deletions
diff --git a/106-Glu117.tikz b/106-Glu117.tikz
new file mode 100644
index 0000000..15d986a
--- /dev/null
+++ b/106-Glu117.tikz
@@ -0,0 +1,147 @@
+% Created by tikzDevice version 0.12.3.1 on 2022-12-05 17:37:37
+% !TEX encoding = UTF-8 Unicode
+\begin{tikzpicture}[x=1pt,y=1pt]
+\definecolor{fillColor}{RGB}{255,255,255}
+\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (216.81,216.81);
+\begin{scope}
+\path[clip] ( 37.09, 30.69) rectangle (211.31,211.31);
+\definecolor{drawColor}{gray}{0.92}
+
+\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09, 69.20) --
+ (211.31, 69.20);
+
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+ (211.31,120.87);
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+ (211.31,172.54);
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+ ( 62.25,211.31);
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+ ( 95.10,211.31);
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+\path[draw=drawColor,line width= 0.6pt,line join=round] (111.53, 30.69) --
+ (111.53,211.31);
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+\path[draw=drawColor,line width= 0.6pt,line join=round] (177.23, 30.69) --
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+\path[draw=drawColor,line width= 0.6pt,line join=round] (210.08, 30.69) --
+ (210.08,211.31);
+\definecolor{drawColor}{RGB}{0,0,0}
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 88.24, 72.79) {Ala};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (137.91, 45.10) {Arg};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 80.16,139.29) {Asn};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 50.12,163.72) {Asp};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 82.81,171.44) {Cys};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (106.83,165.02) {Gln};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 65.12,200.69) {Glu};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (124.93, 96.50) {Gly};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (117.39,115.77) {His};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 97.75,125.67) {Ile};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (121.34, 60.27) {Leu};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (167.62, 66.24) {Lys};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (118.37,139.57) {Met};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (149.02,101.65) {Phe};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (167.81, 33.70) {Pro};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 57.64, 96.46) {Ser};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (195.96, 50.39) {Ter};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 52.48,120.17) {Thr};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (190.97, 77.98) {Trp};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (144.43, 80.64) {Tyr};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 77.74,121.77) {Val};
+\end{scope}
+\begin{scope}
+\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81);
+\definecolor{drawColor}{gray}{0.30}
+
+\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 40.33) {-1.0};
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+\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 92.00) {-0.8};
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+\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,143.67) {-0.6};
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+\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,195.35) {-0.4};
+\end{scope}
+\begin{scope}
+\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81);
+\definecolor{drawColor}{gray}{0.30}
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 45.83, 19.68) {-1.25};
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+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 78.68, 19.68) {-1.00};
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+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (111.53, 19.68) {-0.75};
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+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (144.38, 19.68) {-0.50};
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+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (177.23, 19.68) {-0.25};
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+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (210.08, 19.68) {0.0};
+\end{scope}
+\begin{scope}
+\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81);
+\definecolor{drawColor}{RGB}{0,0,0}
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (124.20, 7.64) {$V_1$};
+\end{scope}
+\begin{scope}
+\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81);
+\definecolor{drawColor}{RGB}{0,0,0}
+
+\node[text=drawColor,rotate= 90.00,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 13.08,121.00) {$V_2$};
+\end{scope}
+\end{tikzpicture}
diff --git a/106-Leu113.tikz b/106-Leu113.tikz
new file mode 100644
index 0000000..a9c1817
--- /dev/null
+++ b/106-Leu113.tikz
@@ -0,0 +1,146 @@
+% Created by tikzDevice version 0.12.3.1 on 2022-12-06 08:20:08
+% !TEX encoding = UTF-8 Unicode
+\begin{tikzpicture}[x=1pt,y=1pt]
+\definecolor{fillColor}{RGB}{255,255,255}
+\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (216.81,216.81);
+\begin{scope}
+\path[clip] ( 37.09, 30.69) rectangle (211.31,211.31);
+\definecolor{drawColor}{gray}{0.92}
+
+\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09, 31.56) --
+ (211.31, 31.56);
+
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+ (211.31, 73.04);
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+ (211.31,114.52);
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+ (211.31,156.00);
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+ (163.72,211.31);
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+ (207.88,211.31);
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+ (211.31, 52.30);
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+ (211.31, 93.78);
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+ (211.31,135.26);
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+ (211.31,176.74);
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+ ( 53.29,211.31);
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+\path[draw=drawColor,line width= 0.6pt,line join=round,line cap=round] (155.28, 62.40) -- (155.36, 72.91);
+
+\path[draw=drawColor,line width= 0.6pt,line join=round,line cap=round] (167.44,116.48) -- (162.03,103.75);
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (117.91, 68.06) {Ala};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (104.39,105.40) {Arg};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (192.69, 56.84) {Asn};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (175.81, 33.70) {Asp};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (142.32, 70.15) {Cys};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (156.29,104.35) {Gln};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (120.33,123.53) {Glu};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 80.47, 85.79) {Gly};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (190.85,104.80) {His};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (195.93, 91.20) {Ile};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 52.48,191.55) {Leu};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (168.48, 91.38) {Lys};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (188.98, 70.83) {Met};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (105.66,160.31) {Phe};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (138.68, 85.46) {Pro};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 92.37,120.91) {Ser};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (145.03,123.91) {Ter};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (144.56, 56.52) {Thr};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (168.54, 57.19) {Trp};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (168.10,117.99) {Tyr};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (116.02, 87.18) {Val};
+\end{scope}
+\begin{scope}
+\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81);
+\definecolor{drawColor}{gray}{0.30}
+
+\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 49.27) {-1.0};
+
+\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 90.75) {-0.8};
+
+\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,132.23) {-0.6};
+
+\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,173.71) {-0.4};
+\end{scope}
+\begin{scope}
+\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81);
+\definecolor{drawColor}{gray}{0.30}
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 53.29, 19.68) {-1.5};
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+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 97.46, 19.68) {-1.0};
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+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (141.63, 19.68) {-0.5};
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+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (185.80, 19.68) {0.0};
+\end{scope}
+\begin{scope}
+\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81);
+\definecolor{drawColor}{RGB}{0,0,0}
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (124.20, 7.64) {$V_1$};
+\end{scope}
+\begin{scope}
+\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81);
+\definecolor{drawColor}{RGB}{0,0,0}
+
+\node[text=drawColor,rotate= 90.00,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 13.08,121.00) {$V_2$};
+\end{scope}
+\end{tikzpicture}
diff --git a/106-Phe115.tikz b/106-Phe115.tikz
new file mode 100644
index 0000000..2cd4efc
--- /dev/null
+++ b/106-Phe115.tikz
@@ -0,0 +1,131 @@
+% Created by tikzDevice version 0.12.3.1 on 2022-12-05 17:36:01
+% !TEX encoding = UTF-8 Unicode
+\begin{tikzpicture}[x=1pt,y=1pt]
+\definecolor{fillColor}{RGB}{255,255,255}
+\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (216.81,216.81);
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+
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+ ( 39.08,211.31);
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+ ( 96.76,211.31);
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+\path[draw=drawColor,line width= 0.6pt,line join=round] (154.44, 30.69) --
+ (154.44,211.31);
+\definecolor{drawColor}{RGB}{0,0,0}
+
+\path[draw=drawColor,line width= 0.6pt,line join=round,line cap=round] ( 72.57,204.49) -- ( 58.22,203.18);
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+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (163.71, 51.63) {Ala};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 85.94, 86.98) {Arg};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (152.54,147.36) {Asn};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (186.99, 92.38) {Asp};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (126.39,142.60) {Cys};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (113.25,123.72) {Gln};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (159.48,109.45) {Glu};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (136.61, 66.22) {Gly};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 47.96,173.67) {His};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (195.93,106.28) {Ile};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (126.07,110.09) {Leu};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 82.69,176.82) {Lys};
+
+\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (109.67,173.72) {Met};
+
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new file mode 100644
index 0000000..cd31c08
--- /dev/null
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diff --git a/106-samples.tikz b/106-samples.tikz
new file mode 100644
index 0000000..dbe0c3e
--- /dev/null
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--- /dev/null
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