diff options
author | Justin Bedo <cu@cua0.org> | 2022-12-05 16:50:43 +1100 |
---|---|---|
committer | Justin Bedo <cu@cua0.org> | 2022-12-07 15:36:01 +1100 |
commit | d35173389b0b9661046c91a1f4106c484316c53f (patch) | |
tree | e284a31d05ca5ffcc1e97454f4b3bbc275bacdff | |
parent | 5703e89a4780e9333e69cfad71fcf2447e02e023 (diff) |
add results from datasets available on mavedb
-rw-r--r-- | 106-Glu117.tikz | 147 | ||||
-rw-r--r-- | 106-Leu113.tikz | 146 | ||||
-rw-r--r-- | 106-Phe115.tikz | 131 | ||||
-rw-r--r-- | 106-samples-log.tikz | 108 | ||||
-rw-r--r-- | 106-samples.tikz | 97 | ||||
-rw-r--r-- | brca1-density.tikz | 4760 | ||||
-rw-r--r-- | brca1-hist-pub.jpg | bin | 0 -> 50900 bytes | |||
-rw-r--r-- | gku689fig3-a.pdf | bin | 0 -> 11820 bytes | |||
-rw-r--r-- | gku689fig3-b.jpg | bin | 0 -> 17660 bytes | |||
-rw-r--r-- | gku689fig3-b.pdf | bin | 0 -> 12972 bytes | |||
-rw-r--r-- | gku689fig3-b.svg | 516 | ||||
-rw-r--r-- | gku689fig3-c.pdf | bin | 0 -> 12801 bytes | |||
-rw-r--r-- | gku689fig3-key.pdf | bin | 0 -> 8777 bytes | |||
-rw-r--r-- | helix-erbb2-pub.jpg | bin | 0 -> 203279 bytes | |||
-rw-r--r-- | helix-erbb2.tikz | 1537 | ||||
-rw-r--r-- | slides.bib | 37 | ||||
-rw-r--r-- | slides.tex | 124 |
17 files changed, 7591 insertions, 12 deletions
diff --git a/106-Glu117.tikz b/106-Glu117.tikz new file mode 100644 index 0000000..15d986a --- /dev/null +++ b/106-Glu117.tikz @@ -0,0 +1,147 @@ +% Created by tikzDevice version 0.12.3.1 on 2022-12-05 17:37:37 +% !TEX encoding = UTF-8 Unicode +\begin{tikzpicture}[x=1pt,y=1pt] +\definecolor{fillColor}{RGB}{255,255,255} +\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (216.81,216.81); +\begin{scope} +\path[clip] ( 37.09, 30.69) rectangle (211.31,211.31); +\definecolor{drawColor}{gray}{0.92} + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09, 69.20) -- + (211.31, 69.20); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09,120.87) -- + (211.31,120.87); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09,172.54) -- + (211.31,172.54); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 62.25, 30.69) -- + ( 62.25,211.31); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 95.10, 30.69) -- + ( 95.10,211.31); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (127.95, 30.69) -- + (127.95,211.31); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (160.80, 30.69) -- + (160.80,211.31); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (193.65, 30.69) -- + (193.65,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09, 43.36) -- + (211.31, 43.36); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09, 95.03) -- + (211.31, 95.03); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09,146.70) -- + (211.31,146.70); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09,198.38) -- + (211.31,198.38); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 45.83, 30.69) -- + ( 45.83,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 78.68, 30.69) -- + ( 78.68,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (111.53, 30.69) -- + (111.53,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (144.38, 30.69) -- + (144.38,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (177.23, 30.69) -- + (177.23,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (210.08, 30.69) -- + (210.08,211.31); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 88.24, 72.79) {Ala}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (137.91, 45.10) {Arg}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 80.16,139.29) {Asn}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 50.12,163.72) {Asp}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 82.81,171.44) {Cys}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (106.83,165.02) {Gln}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 65.12,200.69) {Glu}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (124.93, 96.50) {Gly}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (117.39,115.77) {His}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 97.75,125.67) {Ile}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (121.34, 60.27) {Leu}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (167.62, 66.24) {Lys}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (118.37,139.57) {Met}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (149.02,101.65) {Phe}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (167.81, 33.70) {Pro}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 57.64, 96.46) {Ser}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (195.96, 50.39) {Ter}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 52.48,120.17) {Thr}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (190.97, 77.98) {Trp}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (144.43, 80.64) {Tyr}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 77.74,121.77) {Val}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{gray}{0.30} + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 40.33) {-1.0}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 92.00) {-0.8}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,143.67) {-0.6}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,195.35) {-0.4}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{gray}{0.30} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 45.83, 19.68) {-1.25}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 78.68, 19.68) {-1.00}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (111.53, 19.68) {-0.75}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (144.38, 19.68) {-0.50}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (177.23, 19.68) {-0.25}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (210.08, 19.68) {0.0}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (124.20, 7.64) {$V_1$}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,rotate= 90.00,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 13.08,121.00) {$V_2$}; +\end{scope} +\end{tikzpicture} diff --git a/106-Leu113.tikz b/106-Leu113.tikz new file mode 100644 index 0000000..a9c1817 --- /dev/null +++ b/106-Leu113.tikz @@ -0,0 +1,146 @@ +% Created by tikzDevice version 0.12.3.1 on 2022-12-06 08:20:08 +% !TEX encoding = UTF-8 Unicode +\begin{tikzpicture}[x=1pt,y=1pt] +\definecolor{fillColor}{RGB}{255,255,255} +\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (216.81,216.81); +\begin{scope} +\path[clip] ( 37.09, 30.69) rectangle (211.31,211.31); +\definecolor{drawColor}{gray}{0.92} + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09, 31.56) -- + (211.31, 31.56); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09, 73.04) -- + (211.31, 73.04); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09,114.52) -- + (211.31,114.52); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09,156.00) -- + (211.31,156.00); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09,197.47) -- + (211.31,197.47); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 75.38, 30.69) -- + ( 75.38,211.31); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (119.55, 30.69) -- + (119.55,211.31); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (163.72, 30.69) -- + (163.72,211.31); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (207.88, 30.69) -- + (207.88,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09, 52.30) -- + (211.31, 52.30); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09, 93.78) -- + (211.31, 93.78); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09,135.26) -- + (211.31,135.26); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09,176.74) -- + (211.31,176.74); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 53.29, 30.69) -- + ( 53.29,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 97.46, 30.69) -- + ( 97.46,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (141.63, 30.69) -- + (141.63,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (185.80, 30.69) -- + (185.80,211.31); +\definecolor{drawColor}{RGB}{0,0,0} + +\path[draw=drawColor,line width= 0.6pt,line join=round,line cap=round] (189.43,103.29) -- (181.16, 87.37); + +\path[draw=drawColor,line width= 0.6pt,line join=round,line cap=round] (155.28, 62.40) -- (155.36, 72.91); + +\path[draw=drawColor,line width= 0.6pt,line join=round,line cap=round] (167.44,116.48) -- (162.03,103.75); + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (117.91, 68.06) {Ala}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (104.39,105.40) {Arg}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (192.69, 56.84) {Asn}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (175.81, 33.70) {Asp}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (142.32, 70.15) {Cys}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (156.29,104.35) {Gln}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (120.33,123.53) {Glu}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 80.47, 85.79) {Gly}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (190.85,104.80) {His}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (195.93, 91.20) {Ile}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 52.48,191.55) {Leu}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (168.48, 91.38) {Lys}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (188.98, 70.83) {Met}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (105.66,160.31) {Phe}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (138.68, 85.46) {Pro}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 92.37,120.91) {Ser}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (145.03,123.91) {Ter}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (144.56, 56.52) {Thr}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (168.54, 57.19) {Trp}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (168.10,117.99) {Tyr}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (116.02, 87.18) {Val}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{gray}{0.30} + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 49.27) {-1.0}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 90.75) {-0.8}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,132.23) {-0.6}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,173.71) {-0.4}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{gray}{0.30} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 53.29, 19.68) {-1.5}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 97.46, 19.68) {-1.0}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (141.63, 19.68) {-0.5}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (185.80, 19.68) {0.0}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (124.20, 7.64) {$V_1$}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,rotate= 90.00,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 13.08,121.00) {$V_2$}; +\end{scope} +\end{tikzpicture} diff --git a/106-Phe115.tikz b/106-Phe115.tikz new file mode 100644 index 0000000..2cd4efc --- /dev/null +++ b/106-Phe115.tikz @@ -0,0 +1,131 @@ +% Created by tikzDevice version 0.12.3.1 on 2022-12-05 17:36:01 +% !TEX encoding = UTF-8 Unicode +\begin{tikzpicture}[x=1pt,y=1pt] +\definecolor{fillColor}{RGB}{255,255,255} +\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (216.81,216.81); +\begin{scope} +\path[clip] ( 37.09, 30.69) rectangle (211.31,211.31); +\definecolor{drawColor}{gray}{0.92} + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09, 50.88) -- + (211.31, 50.88); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09, 95.95) -- + (211.31, 95.95); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09,141.02) -- + (211.31,141.02); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09,186.09) -- + (211.31,186.09); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 67.92, 30.69) -- + ( 67.92,211.31); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (125.60, 30.69) -- + (125.60,211.31); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (183.28, 30.69) -- + (183.28,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09, 73.41) -- + (211.31, 73.41); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09,118.48) -- + (211.31,118.48); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09,163.55) -- + (211.31,163.55); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09,208.62) -- + (211.31,208.62); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 39.08, 30.69) -- + ( 39.08,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 96.76, 30.69) -- + ( 96.76,211.31); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (154.44, 30.69) -- + (154.44,211.31); +\definecolor{drawColor}{RGB}{0,0,0} + +\path[draw=drawColor,line width= 0.6pt,line join=round,line cap=round] ( 72.57,204.49) -- ( 58.22,203.18); + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (163.71, 51.63) {Ala}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 85.94, 86.98) {Arg}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (152.54,147.36) {Asn}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (186.99, 92.38) {Asp}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (126.39,142.60) {Cys}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (113.25,123.72) {Gln}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (159.48,109.45) {Glu}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (136.61, 66.22) {Gly}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 47.96,173.67) {His}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (195.93,106.28) {Ile}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (126.07,110.09) {Leu}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 82.69,176.82) {Lys}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (109.67,173.72) {Met}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 83.35,200.70) {Phe}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (193.05, 42.84) {Pro}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (158.32, 82.82) {Ser}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (192.19,135.46) {Ter}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (190.09, 67.97) {Thr}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 83.59,154.40) {Trp}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 59.17,187.30) {Tyr}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (133.47, 90.76) {Val}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{gray}{0.30} + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 70.38) {-0.9}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,115.45) {-0.7}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,160.52) {-0.5}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,205.59) {-0.3}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{gray}{0.30} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 39.08, 19.68) {-1.5}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 96.76, 19.68) {-1.0}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (154.44, 19.68) {-0.5}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (124.20, 7.64) {$V_1$}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (216.81,216.81); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,rotate= 90.00,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 13.08,121.00) {$V_2$}; +\end{scope} +\end{tikzpicture} diff --git a/106-samples-log.tikz b/106-samples-log.tikz new file mode 100644 index 0000000..cd31c08 --- /dev/null +++ b/106-samples-log.tikz @@ -0,0 +1,108 @@ +% Created by tikzDevice version 0.12.3.1 on 2022-12-06 09:08:16 +% !TEX encoding = UTF-8 Unicode +\begin{tikzpicture}[x=1pt,y=1pt] +\definecolor{fillColor}{RGB}{255,255,255} +\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (202.36,202.36); +\begin{scope} +\path[clip] ( 37.09, 30.69) rectangle (196.86,196.86); +\definecolor{drawColor}{gray}{0.92} + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09, 67.17) -- + (196.86, 67.17); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09,125.74) -- + (196.86,125.74); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 37.09,184.31) -- + (196.86,184.31); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 59.03, 30.69) -- + ( 59.03,196.86); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 89.13, 30.69) -- + ( 89.13,196.86); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (119.23, 30.69) -- + (119.23,196.86); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (149.33, 30.69) -- + (149.33,196.86); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (179.44, 30.69) -- + (179.44,196.86); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09, 37.88) -- + (196.86, 37.88); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09, 96.46) -- + (196.86, 96.46); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 37.09,155.03) -- + (196.86,155.03); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 43.97, 30.69) -- + ( 43.97,196.86); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 74.08, 30.69) -- + ( 74.08,196.86); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (104.18, 30.69) -- + (104.18,196.86); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (134.28, 30.69) -- + (134.28,196.86); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (164.39, 30.69) -- + (164.39,196.86); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (194.49, 30.69) -- + (194.49,196.86); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 54.98, 34.45) {$G_3$}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (178.97, 73.13) {$G_0$}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 53.53,108.86) {$G_2$}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (142.27,186.23) {$G_1$}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (202.36,202.36); +\definecolor{drawColor}{gray}{0.30} + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 34.85) {-0.5}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14, 93.43) {0.0}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 32.14,152.00) {0.5}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (202.36,202.36); +\definecolor{drawColor}{gray}{0.30} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 43.97, 19.68) {-0.6}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 74.08, 19.68) {-0.4}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (104.18, 19.68) {-0.2}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (134.28, 19.68) {0.0}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (164.39, 19.68) {0.2}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (194.49, 19.68) {0.4}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (202.36,202.36); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (116.97, 7.64) {$V_1$}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (202.36,202.36); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,rotate= 90.00,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 13.08,113.77) {$V_2$}; +\end{scope} +\end{tikzpicture} diff --git a/106-samples.tikz b/106-samples.tikz new file mode 100644 index 0000000..dbe0c3e --- /dev/null +++ b/106-samples.tikz @@ -0,0 +1,97 @@ +% Created by tikzDevice version 0.12.3.1 on 2022-12-06 08:50:45 +% !TEX encoding = UTF-8 Unicode +\begin{tikzpicture}[x=1pt,y=1pt] +\definecolor{fillColor}{RGB}{255,255,255} +\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (202.36,202.36); +\begin{scope} +\path[clip] ( 30.25, 30.69) rectangle (196.86,196.86); +\definecolor{drawColor}{gray}{0.92} + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 30.25, 57.71) -- + (196.86, 57.71); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 30.25,109.53) -- + (196.86,109.53); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 30.25,161.36) -- + (196.86,161.36); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 69.01, 30.69) -- + ( 69.01,196.86); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (119.93, 30.69) -- + (119.93,196.86); + +\path[draw=drawColor,line width= 0.3pt,line join=round] (170.85, 30.69) -- + (170.85,196.86); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 30.25, 31.79) -- + (196.86, 31.79); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 30.25, 83.62) -- + (196.86, 83.62); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 30.25,135.45) -- + (196.86,135.45); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 30.25,187.28) -- + (196.86,187.28); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 43.55, 30.69) -- + ( 43.55,196.86); + +\path[draw=drawColor,line width= 0.6pt,line join=round] ( 94.47, 30.69) -- + ( 94.47,196.86); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (145.39, 30.69) -- + (145.39,196.86); + +\path[draw=drawColor,line width= 0.6pt,line join=round] (196.31, 30.69) -- + (196.31,196.86); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 48.76,185.57) {$G_3$}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (178.35, 34.47) {$G_0$}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 51.91,136.77) {$G_2$}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (147.80,107.20) {$G_1$}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (202.36,202.36); +\definecolor{drawColor}{gray}{0.30} + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 25.30, 28.76) {-4}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 25.30, 80.59) {-2}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 25.30,132.42) {0}; + +\node[text=drawColor,anchor=base east,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 25.30,184.24) {2}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (202.36,202.36); +\definecolor{drawColor}{gray}{0.30} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 43.55, 19.68) {-4}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at ( 94.47, 19.68) {-3}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (145.39, 19.68) {-2}; + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 0.88] at (196.31, 19.68) {-1}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (202.36,202.36); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at (113.55, 7.64) {$V_1$}; +\end{scope} +\begin{scope} +\path[clip] ( 0.00, 0.00) rectangle (202.36,202.36); +\definecolor{drawColor}{RGB}{0,0,0} + +\node[text=drawColor,rotate= 90.00,anchor=base,inner sep=0pt, outer sep=0pt, scale= 1.10] at ( 13.08,113.77) {$V_2$}; +\end{scope} +\end{tikzpicture} diff --git a/brca1-density.tikz b/brca1-density.tikz new file mode 100644 index 0000000..3e538fc --- /dev/null +++ b/brca1-density.tikz @@ -0,0 +1,4760 @@ +% Created by tikzDevice version 0.12.3.1 on 2022-12-07 11:15:58 +% !TEX encoding = UTF-8 Unicode +\begin{tikzpicture}[x=1pt,y=1pt] +\definecolor{fillColor}{RGB}{255,255,255} +\path[use as bounding box,fill=fillColor,fill opacity=0.00] (0,0) rectangle (292.69,180.67); +\begin{scope} +\path[clip] ( 27.31, 30.69) rectangle (197.05,175.17); +\definecolor{drawColor}{gray}{0.92} + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 27.31, 52.91) -- + (197.05, 52.91); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 27.31, 84.22) -- + (197.05, 84.22); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 27.31,115.53) -- + (197.05,115.53); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 27.31,146.84) -- + (197.05,146.84); + +\path[draw=drawColor,line width= 0.3pt,line join=round] ( 51.41, 30.69) -- + ( 51.41,175.17); 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