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| -rw-r--r-- | README | 4 |
1 files changed, 2 insertions, 2 deletions
@@ -2,7 +2,7 @@ This is a reimplementation of Xenomapper [1] in Haskell. Unlike the orginal it is significantly more focused in scope: only primary specific alignments are output. -Example usage: "xenomapper primary-specific.bam primary.bam secondary.bam" +Example usage: "xenomapper output.bam primary-input.bam secondary-input.bam" The first argument is the output bam path, and the subsequent are the primary and secondary alignments. NB: the inputs must be name sorted @@ -18,7 +18,7 @@ to build, or if you have already cloned the repository then simply in the root. You can also just: - nix run git://vk3.wtf/xenomapper-hs.git primary-specific.bam primary.bam secondary.bam + nix run git://vk3.wtf/xenomapper-hs.git output.bam primary-input.bam secondary-input.bam -- 1: https://github.com/genomematt/xenomapper |