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authorJustin Bedo <cu@cua0.org>2018-11-14 13:53:49 +1100
committerJustin Bedo <cu@cua0.org>2018-11-14 13:53:49 +1100
commit08f9d475e616c1034bcb04b8ad9ac4f139b4be9e (patch)
treeb21f04d710f5a39fa953bd25fd1e53862cdd74cc
parent2c92dd5c6425c67a18ab07eba7f15c07dbd4614a (diff)
Add ensembl mouse transcriptome
-rwxr-xr-xlib/references.nix22
1 files changed, 22 insertions, 0 deletions
diff --git a/lib/references.nix b/lib/references.nix
index bdeefa6..1ac92de 100755
--- a/lib/references.nix
+++ b/lib/references.nix
@@ -82,6 +82,28 @@ rec {
buildCommand = "gunzip < $src > $out";
passthru.filetype = filetype.fa {};
};
+ ensembl = {
+ cdna = stdenvNoCC.mkDerivation rec {
+ name = "ensembl-grch38-cdna-${version}";
+ version = "94";
+ src = fetchurl {
+ url = "ftp://ftp.ensembl.org/pub/release-${version}/fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz";
+ sha256 = "0khp9l6s35lav2xqp7vkk6ybnz4wjihn7lapjf2lbpnbzjb4hp6d";
+ };
+ buildCommand = "gunzip < $src > $out";
+ passthru.filetype = filetype.fa {};
+ };
+ ncrna = stdenvNoCC.mkDerivation rec {
+ name = "ensembl-grch38-ncrna-${version}";
+ version = "94";
+ src = fetchurl {
+ url = "ftp://ftp.ensembl.org/pub/release-${version}/fasta/mus_musculus/ncrna/Mus_musculus.GRCm38.ncrna.fa.gz";
+ sha256 = "0d997gm8p2b89rm5d46m2x4vz9lijxarfr2lzylnbi8gyqrbagdd";
+ };
+ buildCommand = "gunzip < $src > $out";
+ passthru.filetype = filetype.fa {};
+ };
+ };
};
mm10 = mm10-p4;