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authorJustin Bedo <cu@cua0.org>2022-02-09 12:22:30 +1100
committerJustin Bedo <cu@cua0.org>2022-02-09 12:22:30 +1100
commit25515012d0051a4074de0e4692b7fd336c7ddf4a (patch)
tree6bf039a2aa9ce085272d7b953a20ad5a9b511660
parent96c9a8880a690d2d8058663a805c3b363e416a8d (diff)
whisper: fix sorting for sam output
-rw-r--r--tools/whisper-align.nix2
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/whisper-align.nix b/tools/whisper-align.nix
index e76e921..38bcedf 100644
--- a/tools/whisper-align.nix
+++ b/tools/whisper-align.nix
@@ -35,7 +35,7 @@ stage {
${optionalString (input2 != null) (fq input2)} \
> $out
'';
- passthru.filetype = if bamOutput then filetype.bam { inherit ref; sorting = sort.none { }; } else filetype.sam { inherit ref; sorting = sort.name { }; };
+ passthru.filetype = if bamOutput then filetype.bam { inherit ref; sorting = sort.none { }; } else filetype.sam { inherit ref; sorting = sort.none { }; };
passthru.multicore = true;
stripStorePaths = false;
}