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authorl-d-s <distefano.l@wehi.edu.au>2018-09-06 11:40:57 +1000
committerGitHub <noreply@github.com>2018-09-06 11:40:57 +1000
commit53d7e1cd88cc9d7ef3574b36c44e53a9887ca83c (patch)
treeb5a062bcf83a65bf3be3ed06e25e0a730be2c3b9
parentb585746606c9e15585a926507124c2261e73d857 (diff)
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@@ -2,7 +2,5 @@ We show how Nix, a cross-platform advanced package manager, cleanly solves a num
Nix can easily create and manage isolated environments, and with our transparent and lightweight extensions can also succinctly describe computational pipelines (workflows), manage their execution in HPC environments or across multiple machines, and produce portable containers (Docker or Singularity images).
We illustrate all our techniques on a typical bioinformatics pipeline.
-We compare our approach with the conda software suite. Nix lacks the extensive suite of bioinformatics packages available in Bioconda, but provides a significantly higher degree of reproducibility due to its strong isolation and declarative language.
+We also compare our approach with the conda software suite. Nix lacks the extensive suite of bioinformatics packages available in Bioconda, but provides a significantly higher degree of reproducibility due to its strong isolation and declarative language.
Moreover, we demonstrate that conda can be used within Nix to leverage Bioconda packages—with some loss of the reproducibility guarantees that a pure Nix solution would entail.
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