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authorJustin Bedo <cu@cua0.org>2019-07-08 10:23:54 +1000
committerJustin Bedo <cu@cua0.org>2019-07-08 15:07:32 +1000
commit5cdc23b7e62d1d0be67047ff95cd74e570a65922 (patch)
tree3c74d0cf09efdf2aae4eabe82c3c8a0e0966146d
parentf9b34ffb0d985295223ed952ae5262c39aeda101 (diff)
tests: add kallisto test
-rw-r--r--test-tnpair.nix1
1 files changed, 1 insertions, 0 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix
index afbdf68..5d9fee2 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -64,6 +64,7 @@ let
};
testNaming = linkOutputs {
+ kallisto = kallisto.quant {inherit ref;} (attrValues tnpair.tumour.files);
facets = facets.callCNV {} {vcf = tnpairResult.platypusVars; bams = with tnpairResult.alignments; [ normal tumour ];};
cnvkit = cnvkitResults.cnvs;
"cnvkit.pdf" = cnvkitResults.plot;