fastp: use nixpkgs version

3 files changed, 1 insertions, 26 deletions

diff --git a/tools/fastp-app.nix b/tools/fastp-app.nix
deleted file mode 100644
index bb716e2..0000000
--- a/tools/fastp-app.nix
+++ /dev/null
@@ -1,23 +0,0 @@
-{ stdenv
-, fetchFromGitHub
-, zlib 
-}:
-
-stdenv.mkDerivation rec {
-  name = "fastp-${version}";
-  version = "0.20.0";
-
-  src = fetchFromGitHub {
-    owner = "OpenGene";
-    repo = "fastp";
-    rev = "v${version}";
-    sha256 = "0y0qfp3j3gqnmlqskna8x43acss21vxwck287c4fagxlcaba0s30";
-  };
-
-  buildInputs = [ zlib ];
-
-  installPhase = ''
-    mkdir -p $out/bin
-    cp fastp $out/bin
-  '';
-}
diff --git a/tools/fastp-check.nix b/tools/fastp-check.nix
index bd522d8..06f00ae 100644
--- a/tools/fastp-check.nix
+++ b/tools/fastp-check.nix
@@ -16,7 +16,7 @@ let
   out =
     stage {
         name = "fastp";
-        buildInputs = [ fastp.app ];
+        buildInputs = [ pkgs.fastp ];
         outputs = [ "out" "fastq1" "json" ] ++ (if input2 != null then [ "fastq2" ] else []);
         buildCommand = ''
             mkdir -p $out
diff --git a/tools/fastp.nix b/tools/fastp.nix
index 551d270..36bc690 100644
--- a/tools/fastp.nix
+++ b/tools/fastp.nix
@@ -3,8 +3,6 @@
 with bionix;
 
 rec {
-    app = pkgs.callPackage ./fastp-app.nix {};
-
     /* Check and filter fastqs
     Type: { ... } -> { input1, input2 ? null } -> { out :: html, fastq1 :: fastq, fastq2 :: fastq, json :: JSON } 
     */