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authorJustin Bedo <cu@cua0.org>2019-09-06 10:59:14 +1000
committerJustin Bedo <cu@cua0.org>2019-09-06 10:59:45 +1000
commit84d273e9ab9c02b3da3c4ec53f7e5bcb6f780030 (patch)
tree5e9357ab9f294c599b1314039d33baa40eb83fc5
parent233c5f9a09ba82e94b042ac22462dcdfa8ffbae2 (diff)
test: disable strelka somatic test
-rw-r--r--test-tnpair.nix9
1 files changed, 4 insertions, 5 deletions
diff --git a/test-tnpair.nix b/test-tnpair.nix
index bb356b2..3601a13 100644
--- a/test-tnpair.nix
+++ b/test-tnpair.nix
@@ -71,11 +71,10 @@ let
"cnvkit.pdf" = cnvkitResults.plot;
"octopus.vcf" = tnpairResult.octopusVars;
"octopus-somatic.vcf" = tnpairResult.octopusSomatic;
- strelka = tnpairResult.variants;
- strelka-gl = tnpairResult.glvariants;
- strelka-indels = tnpairResult.variants.indels;
- "strelka.snvs.vcf" = tnpairResult.variants.snvs;
- "strelka.gl.vcf" = tnpairResult.glvariants.variants;
+ #strelka = tnpairResult.variants;
+ #strelka-indels = tnpairResult.variants.indels;
+ #"strelka.snvs.vcf" = tnpairResult.variants.snvs;
+ "strelka.gl.vcf" = tnpairResult.glvariants;
gridss = gridss.callVariants {} (with tnpairResult.alignments; [normal tumour]);
gridss2 = gridss.call (with tnpairResult.alignments; [normal tumour]);
gridss3 = gridss.callAndAssemble (with tnpairResult.alignments; [normal tumour]);