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| author | l-d-s <distefano.l@wehi.edu.au> | 2018-11-07 10:03:20 +1100 |
|---|---|---|
| committer | l-d-s <distefano.l@wehi.edu.au> | 2018-11-07 10:03:20 +1100 |
| commit | c45a6b1c1b68cd08efe55ec1df197c0c26b5ca49 (patch) | |
| tree | 1275f4ac7d895493ffe3e7e3eed7f394851ae088 | |
| parent | e7cd661d1c5fb4135e3d436e151294e26aef9127 (diff) | |
Add bwa to softClipsToSplitReads
| -rw-r--r-- | tools/gridss-softClipsToSplitReads.nix | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix index 8a7dca3..cc40e52 100644 --- a/tools/gridss-softClipsToSplitReads.nix +++ b/tools/gridss-softClipsToSplitReads.nix @@ -20,7 +20,7 @@ assert (matchFileSorting "gridss-softClipsToSplitReads" { name = _: true; } inpu stdenv.mkDerivation rec { name = "gridss-softClipsToSplitReads"; - buildInputs = [ jre ]; + buildInputs = [ jre bwa ]; buildCommand = '' ln -s ${ref} ref.fa ln -s ${bionix.samtools.faidx faidxAttrs ref} ref.fa.fai |