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authorl-d-s <distefano.l@wehi.edu.au>2018-11-07 10:03:20 +1100
committerl-d-s <distefano.l@wehi.edu.au>2018-11-07 10:03:20 +1100
commitc45a6b1c1b68cd08efe55ec1df197c0c26b5ca49 (patch)
tree1275f4ac7d895493ffe3e7e3eed7f394851ae088
parente7cd661d1c5fb4135e3d436e151294e26aef9127 (diff)
Add bwa to softClipsToSplitReads
-rw-r--r--tools/gridss-softClipsToSplitReads.nix2
1 files changed, 1 insertions, 1 deletions
diff --git a/tools/gridss-softClipsToSplitReads.nix b/tools/gridss-softClipsToSplitReads.nix
index 8a7dca3..cc40e52 100644
--- a/tools/gridss-softClipsToSplitReads.nix
+++ b/tools/gridss-softClipsToSplitReads.nix
@@ -20,7 +20,7 @@ assert (matchFileSorting "gridss-softClipsToSplitReads" { name = _: true; } inpu
stdenv.mkDerivation rec {
name = "gridss-softClipsToSplitReads";
- buildInputs = [ jre ];
+ buildInputs = [ jre bwa ];
buildCommand = ''
ln -s ${ref} ref.fa
ln -s ${bionix.samtools.faidx faidxAttrs ref} ref.fa.fai